mirror of
https://github.com/andreytkachenko/kdtree-rust.git
synced 2024-11-24 10:26:25 +04:00
generic over float type
This commit is contained in:
parent
09606936ad
commit
c31758c883
@ -16,10 +16,12 @@ bench = false
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[[bench]]
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[[bench]]
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name = "bench"
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name = "bench"
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path = "src/bench.rs"
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harness = false
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harness = false
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[dev-dependencies]
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[dev-dependencies]
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quickcheck = "~0.9"
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quickcheck = "~0.9"
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rand = "~0.7"
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rand = "~0.7"
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bencher = "~0.1"
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bencher = "~0.1"
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[dependencies]
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num-traits = "0.2"
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@ -1,11 +1,10 @@
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#[macro_use]
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#[macro_use]
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extern crate bencher;
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extern crate bencher;
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extern crate kdtree;
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extern crate rand;
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use bencher::Bencher;
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use bencher::Bencher;
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use rand::Rng;
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use rand::Rng;
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use kdtree::kdtree::KdTree;
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use kdtree::kdtree::test_common::*;
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use kdtree::kdtree::test_common::*;
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fn gen_random() -> f64 {
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fn gen_random() -> f64 {
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@ -27,7 +26,7 @@ fn bench_creating_1000_node_tree(b: &mut Bencher) {
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let points = generate_points(len);
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let points = generate_points(len);
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b.iter(|| {
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b.iter(|| {
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kdtree::kdtree::KdTree::new(&mut points.clone());
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KdTree::new(&mut points.clone());
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});
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});
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}
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}
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@ -35,7 +34,7 @@ fn bench_single_loop_times_for_1000_node_tree(b: &mut Bencher) {
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let len = 1000usize;
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let len = 1000usize;
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let points = generate_points(len);
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let points = generate_points(len);
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let tree = kdtree::kdtree::KdTree::new(&mut points.clone());
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let tree = KdTree::new(&mut points.clone());
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b.iter(|| tree.nearest_search(&points[0]));
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b.iter(|| tree.nearest_search(&points[0]));
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@ -47,14 +46,14 @@ fn bench_creating_1000_000_node_tree(b: &mut Bencher) {
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let points = generate_points(len);
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let points = generate_points(len);
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b.iter(|| {
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b.iter(|| {
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kdtree::kdtree::KdTree::new(&mut points.clone());
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KdTree::new(&mut points.clone());
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});
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});
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}
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}
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fn bench_adding_same_node_to_1000_tree(b: &mut Bencher) {
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fn bench_adding_same_node_to_1000_tree(b: &mut Bencher) {
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let len = 1000usize;
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let len = 1000usize;
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let mut points = generate_points(len);
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let mut points = generate_points(len);
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let mut tree = kdtree::kdtree::KdTree::new(&mut points);
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let mut tree = KdTree::new(&mut points);
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let point = Point3WithId::new(-1 as i32, gen_random(), gen_random(), gen_random());
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let point = Point3WithId::new(-1 as i32, gen_random(), gen_random(), gen_random());
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b.iter(|| {
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b.iter(|| {
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@ -66,7 +65,7 @@ fn bench_incrementally_building_the_1000_tree(b: &mut Bencher) {
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b.iter(|| {
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b.iter(|| {
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let len = 1usize;
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let len = 1usize;
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let mut points = generate_points(len);
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let mut points = generate_points(len);
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let mut tree = kdtree::kdtree::KdTree::new(&mut points);
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let mut tree = KdTree::new(&mut points);
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for _ in 0 .. 1000 {
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for _ in 0 .. 1000 {
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let point = Point3WithId::new(-1 as i32, gen_random(), gen_random(), gen_random());
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let point = Point3WithId::new(-1 as i32, gen_random(), gen_random(), gen_random());
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tree.insert_node(point);
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tree.insert_node(point);
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@ -1,31 +1,31 @@
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use num_traits::Float;
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use crate::kdtree::KdTreePoint;
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use crate::kdtree::KdTreePoint;
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#[derive(Clone, Copy)]
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#[derive(Clone, Copy)]
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pub struct Bounds {
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pub struct Bounds<F: Float> {
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pub bounds: [(f64, f64); 3],
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pub bounds: [(F, F); 3],
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widest_dim: usize,
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widest_dim: usize,
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midvalue_of_widest_dim: f64,
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midvalue_of_widest_dim: F,
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}
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}
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impl Bounds {
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impl<F: Float> Bounds<F> {
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pub fn new_from_points<T: KdTreePoint>(points: &[T]) -> Bounds {
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pub fn new_from_points<T: KdTreePoint<F>>(points: &[T]) -> Bounds<F> {
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let mut bounds = Bounds {
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let mut bounds = Bounds {
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bounds: [(0., 0.), (0., 0.), (0., 0.)],
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bounds: [(F::zero(), F::zero()), (F::zero(), F::zero()), (F::zero(), F::zero())],
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widest_dim: 0,
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widest_dim: 0,
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midvalue_of_widest_dim: 0.,
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midvalue_of_widest_dim: F::zero(),
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};
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};
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for i in 0..points[0].dims().len() {
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for i in 0..points[0].dims() {
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bounds.bounds[i].0 = points[0].dims()[i];
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bounds.bounds[i].0 = points[0].dim(i);
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bounds.bounds[i].1 = points[0].dims()[i];
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bounds.bounds[i].1 = points[0].dim(i);
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}
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}
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for v in points.iter() {
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for v in points.iter() {
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for dim in 0..v.dims().len() {
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for dim in 0..v.dims() {
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bounds.bounds[dim].0 = bounds.bounds[dim].0.min(v.dims()[dim]);
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bounds.bounds[dim].0 = bounds.bounds[dim].0.min(v.dim(dim));
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bounds.bounds[dim].1 = bounds.bounds[dim].1.max(v.dims()[dim]);
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bounds.bounds[dim].1 = bounds.bounds[dim].1.max(v.dim(dim));
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}
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}
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}
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}
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@ -34,15 +34,18 @@ impl Bounds {
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bounds
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bounds
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}
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}
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#[inline]
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pub fn get_widest_dim(&self) -> usize {
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pub fn get_widest_dim(&self) -> usize {
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self.widest_dim
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self.widest_dim
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}
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}
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pub fn get_midvalue_of_widest_dim(&self) -> f64 {
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#[inline]
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pub fn get_midvalue_of_widest_dim(&self) -> F {
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self.midvalue_of_widest_dim
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self.midvalue_of_widest_dim
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}
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}
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pub fn clone_moving_max(&self, value: f64, dimension: usize) -> Bounds {
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#[inline]
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pub fn clone_moving_max(&self, value: F, dimension: usize) -> Bounds<F> {
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let mut cloned = Bounds {
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let mut cloned = Bounds {
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bounds: self.bounds.clone(),
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bounds: self.bounds.clone(),
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..*self
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..*self
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@ -55,7 +58,7 @@ impl Bounds {
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cloned
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cloned
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}
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}
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pub fn clone_moving_min(&self, value: f64, dimension: usize) -> Bounds {
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pub fn clone_moving_min(&self, value: F, dimension: usize) -> Bounds<F> {
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let mut cloned = Bounds {
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let mut cloned = Bounds {
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bounds: self.bounds.clone(),
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bounds: self.bounds.clone(),
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..*self
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..*self
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@ -85,7 +88,7 @@ impl Bounds {
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fn calculate_variables(&mut self) {
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fn calculate_variables(&mut self) {
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self.calculate_widest_dim();
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self.calculate_widest_dim();
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self.midvalue_of_widest_dim = (self.bounds[self.get_widest_dim()].0 + self.bounds[self.get_widest_dim()].1) / 2.0;
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self.midvalue_of_widest_dim = (self.bounds[self.get_widest_dim()].0 + self.bounds[self.get_widest_dim()].1) / F::from(2.0f32).unwrap();
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}
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}
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}
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}
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@ -1,39 +0,0 @@
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pub fn squared_euclidean(a: &[f64], b: &[f64]) -> f64 {
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debug_assert!(a.len() == b.len());
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a.iter().zip(b.iter())
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.map(|(x, y)| (x - y) * (x - y))
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.sum()
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}
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#[cfg(test)]
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mod tests {
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use super::*;
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#[test]
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fn squared_euclidean_test_1d() {
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let a = [2.];
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let b = [4.];
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let c = [-2.];
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assert_eq!(0., squared_euclidean(&a, &a));
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assert_eq!(4., squared_euclidean(&a, &b));
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assert_eq!(16., squared_euclidean(&a, &c));
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}
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#[test]
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fn squared_euclidean_test_2d() {
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let a = [2., 2.];
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let b = [4., 2.];
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let c = [4., 4.];
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assert_eq!(0., squared_euclidean(&a, &a));
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assert_eq!(4., squared_euclidean(&a, &b));
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assert_eq!(8., squared_euclidean(&a, &c));
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}
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}
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pub mod test_common;
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pub mod test_common;
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pub mod distance;
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mod partition;
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mod partition;
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mod bounds;
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mod bounds;
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use self::bounds::*;
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use self::bounds::*;
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use self::distance::*;
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use std::cmp;
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use num_traits::Float;
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use core::cmp;
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pub trait KdTreePoint: Copy + PartialEq {
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pub trait KdTreePoint<F: Float>: Copy + PartialEq {
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fn dist_1d(left: f64, right: f64, _dim: usize) -> f64 {
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fn dist_1d(left: F, right: F, _dim: usize) -> F {
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let diff = left - right;
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let diff = left - right;
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diff * diff
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diff * diff
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}
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}
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fn dims(&self) -> &[f64];
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fn dims(&self) -> usize;
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fn dist(&self, other: &Self) -> f64 {
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fn dim(&self, i: usize) -> F;
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squared_euclidean(self.dims(), other.dims())
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fn dist(&self, other: &Self) -> F {
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let mut sum = F::zero();
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for i in 0..self.dims() {
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let x = self.dim(i);
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let y = other.dim(i);
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let diff = x - y;
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sum = sum + diff * diff;
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}
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sum
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}
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#[inline]
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fn to_vec(&self) -> Vec<F> {
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(0..self.dims())
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.map(|x| self.dim(x))
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.collect()
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}
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}
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}
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}
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pub struct NearestNeighboursIter<'a, T> {
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pub struct NearestNeighboursIter<'a, F: Float, T> {
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range: f64,
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range: F,
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kdtree: &'a KdTree<T>,
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kdtree: &'a KdTree<F, T>,
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ref_node: T,
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ref_node: T,
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node_stack: Vec<usize>,
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node_stack: Vec<usize>,
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}
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}
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impl<'a, T> Iterator for NearestNeighboursIter<'a, T>
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impl<'a, F: Float, T> Iterator for NearestNeighboursIter<'a, F, T>
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where T: KdTreePoint
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where T: KdTreePoint<F>
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{
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{
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type Item = (f64, &'a T);
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type Item = (F, &'a T);
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fn next(&mut self) -> Option<Self::Item> {
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fn next(&mut self) -> Option<Self::Item> {
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let p = &self.ref_node;
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let p = &self.ref_node;
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@ -42,7 +59,7 @@ impl<'a, T> Iterator for NearestNeighboursIter<'a, T>
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let node = &self.kdtree.nodes[node_idx];
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let node = &self.kdtree.nodes[node_idx];
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let splitting_value = node.split_on;
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let splitting_value = node.split_on;
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let point_splitting_dim_value = p.dims()[node.dimension];
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let point_splitting_dim_value = p.dim(node.dimension);
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let distance_on_single_dimension = T::dist_1d(splitting_value, point_splitting_dim_value, node.dimension);
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let distance_on_single_dimension = T::dist_1d(splitting_value, point_splitting_dim_value, node.dimension);
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if distance_on_single_dimension <= self.range {
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if distance_on_single_dimension <= self.range {
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@ -71,15 +88,15 @@ impl<'a, T> Iterator for NearestNeighboursIter<'a, T>
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}
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}
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}
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}
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pub struct KdTree<KP> {
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pub struct KdTree<F: Float, KP> {
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nodes: Vec<KdTreeNode<KP>>,
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nodes: Vec<KdTreeNode<F, KP>>,
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node_adding_dimension: usize,
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node_adding_dimension: usize,
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node_depth_during_last_rebuild: usize,
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node_depth_during_last_rebuild: usize,
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current_node_depth: usize,
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current_node_depth: usize,
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}
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}
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impl<KP: KdTreePoint> KdTree<KP> {
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impl<F: Float, KP: KdTreePoint<F>> KdTree<F, KP> {
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#[inline]
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#[inline]
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pub fn empty() -> Self {
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pub fn empty() -> Self {
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KdTree {
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KdTree {
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@ -115,13 +132,13 @@ impl<KP: KdTreePoint> KdTree<KP> {
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/// Can be used if you are sure that the tree is degenerated or if you will never again insert the nodes into the tree.
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/// Can be used if you are sure that the tree is degenerated or if you will never again insert the nodes into the tree.
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pub fn gather_points_and_rebuild(&mut self) {
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pub fn gather_points_and_rebuild(&mut self) {
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let original = std::mem::replace(self, Self::empty());
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let original = core::mem::replace(self, Self::empty());
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let mut points: Vec<_> = original.into_iter().collect();
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let mut points: Vec<_> = original.into_iter().collect();
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self.rebuild_tree(&mut points);
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self.rebuild_tree(&mut points);
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}
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}
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pub fn nearest_search(&self, node: &KP) -> (f64, &KP) {
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pub fn nearest_search(&self, node: &KP) -> (F, &KP) {
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let mut nearest_neighbor = 0usize;
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let mut nearest_neighbor = 0usize;
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let mut best_distance = self.nodes[0].point.dist(&node);
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let mut best_distance = self.nodes[0].point.dist(&node);
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@ -130,7 +147,7 @@ impl<KP: KdTreePoint> KdTree<KP> {
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(best_distance, &self.nodes[nearest_neighbor].point)
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(best_distance, &self.nodes[nearest_neighbor].point)
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}
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}
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pub fn nearest_search_dist(&self, node: KP, dist: f64) -> NearestNeighboursIter<'_, KP> {
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pub fn nearest_search_dist(&self, node: KP, dist: F) -> NearestNeighboursIter<'_, F, KP> {
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let mut node_stack = Vec::with_capacity(16);
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let mut node_stack = Vec::with_capacity(16);
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node_stack.push(0);
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node_stack.push(0);
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@ -142,13 +159,15 @@ impl<KP: KdTreePoint> KdTree<KP> {
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}
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}
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}
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}
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pub fn has_neighbor_in_range(&self, node: &KP, range: f64) -> bool {
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#[inline]
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pub fn has_neighbor_in_range(&self, node: &KP, range: F) -> bool {
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let squared_range = range * range;
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let squared_range = range * range;
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self.distance_squared_to_nearest(node) <= squared_range
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self.distance_squared_to_nearest(node) <= squared_range
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}
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}
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pub fn distance_squared_to_nearest(&self, node: &KP) -> f64 {
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#[inline]
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pub fn distance_squared_to_nearest(&self, node: &KP) -> F {
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self.nearest_search(node).0
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self.nearest_search(node).0
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}
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}
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@ -165,7 +184,7 @@ impl<KP: KdTreePoint> KdTree<KP> {
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pub fn insert_node(&mut self, node_to_add: KP) {
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pub fn insert_node(&mut self, node_to_add: KP) {
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let mut current_index = 0;
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let mut current_index = 0;
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let dimension = self.node_adding_dimension;
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let dimension = self.node_adding_dimension;
|
||||||
let dims = node_to_add.dims().to_vec();
|
let dims = node_to_add.to_vec();
|
||||||
let index_of_new_node = self.add_node(node_to_add, dimension,dims[dimension]);
|
let index_of_new_node = self.add_node(node_to_add, dimension,dims[dimension]);
|
||||||
|
|
||||||
self.node_adding_dimension = (dimension + 1) % dims.len();
|
self.node_adding_dimension = (dimension + 1) % dims.len();
|
||||||
@ -211,16 +230,16 @@ impl<KP: KdTreePoint> KdTree<KP> {
|
|||||||
self.nodes.pop();
|
self.nodes.pop();
|
||||||
}
|
}
|
||||||
|
|
||||||
if self.node_depth_during_last_rebuild as f64 * 4.0 < depth as f64 {
|
if F::from(self.node_depth_during_last_rebuild).unwrap() * F::from(4.0).unwrap() < F::from(depth).unwrap() {
|
||||||
self.gather_points_and_rebuild();
|
self.gather_points_and_rebuild();
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
fn nearest_search_impl(&self, p: &KP, searched_index: usize, best_distance_squared: &mut f64, best_leaf_found: &mut usize) {
|
fn nearest_search_impl(&self, p: &KP, searched_index: usize, best_distance_squared: &mut F, best_leaf_found: &mut usize) {
|
||||||
let node = &self.nodes[searched_index];
|
let node = &self.nodes[searched_index];
|
||||||
|
|
||||||
let splitting_value = node.split_on;
|
let splitting_value = node.split_on;
|
||||||
let point_splitting_dim_value = p.dims()[node.dimension];
|
let point_splitting_dim_value = p.dim(node.dimension);
|
||||||
|
|
||||||
let (closer_node, farther_node) = if point_splitting_dim_value <= splitting_value {
|
let (closer_node, farther_node) = if point_splitting_dim_value <= splitting_value {
|
||||||
(node.left_node, node.right_node)
|
(node.left_node, node.right_node)
|
||||||
@ -247,16 +266,16 @@ impl<KP: KdTreePoint> KdTree<KP> {
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
fn add_node(&mut self, p: KP, dimension: usize, split_on: f64) -> usize {
|
fn add_node(&mut self, p: KP, dimension: usize, split_on: F) -> usize {
|
||||||
let node = KdTreeNode::new(p, dimension, split_on);
|
let node = KdTreeNode::new(p, dimension, split_on);
|
||||||
|
|
||||||
self.nodes.push(node);
|
self.nodes.push(node);
|
||||||
self.nodes.len() - 1
|
self.nodes.len() - 1
|
||||||
}
|
}
|
||||||
|
|
||||||
fn build_tree(&mut self, nodes: &mut [KP], bounds: &Bounds, depth : usize) -> usize {
|
fn build_tree(&mut self, nodes: &mut [KP], bounds: &Bounds<F>, depth : usize) -> usize {
|
||||||
let splitting_index = partition::partition_sliding_midpoint(nodes, bounds.get_midvalue_of_widest_dim(), bounds.get_widest_dim());
|
let splitting_index = partition::partition_sliding_midpoint(nodes, bounds.get_midvalue_of_widest_dim(), bounds.get_widest_dim());
|
||||||
let pivot_value = nodes[splitting_index].dims()[bounds.get_widest_dim()];
|
let pivot_value = nodes[splitting_index].dim(bounds.get_widest_dim());
|
||||||
|
|
||||||
let node_id = self.add_node(nodes[splitting_index], bounds.get_widest_dim(), pivot_value);
|
let node_id = self.add_node(nodes[splitting_index], bounds.get_widest_dim(), pivot_value);
|
||||||
let nodes_len = nodes.len();
|
let nodes_len = nodes.len();
|
||||||
@ -287,17 +306,17 @@ impl<KP: KdTreePoint> KdTree<KP> {
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
pub struct KdTreeNode<T> {
|
pub struct KdTreeNode<F: Float, T> {
|
||||||
left_node: Option<usize>,
|
left_node: Option<usize>,
|
||||||
right_node: Option<usize>,
|
right_node: Option<usize>,
|
||||||
|
|
||||||
point: T,
|
point: T,
|
||||||
dimension: usize,
|
dimension: usize,
|
||||||
split_on: f64
|
split_on: F
|
||||||
}
|
}
|
||||||
|
|
||||||
impl<T: KdTreePoint> KdTreeNode<T> {
|
impl<F: Float, T: KdTreePoint<F>> KdTreeNode<F, T> {
|
||||||
fn new(p: T, splitting_dimension: usize, split_on_value: f64) -> KdTreeNode<T> {
|
fn new(p: T, splitting_dimension: usize, split_on_value: F) -> KdTreeNode<F, T> {
|
||||||
KdTreeNode {
|
KdTreeNode {
|
||||||
left_node: None,
|
left_node: None,
|
||||||
right_node: None,
|
right_node: None,
|
||||||
@ -401,8 +420,8 @@ mod tests {
|
|||||||
assert_eq!(tree.nodes[0].dimension, 0);
|
assert_eq!(tree.nodes[0].dimension, 0);
|
||||||
|
|
||||||
assert_eq!(tree.nodes[0].left_node.is_some(), true);
|
assert_eq!(tree.nodes[0].left_node.is_some(), true);
|
||||||
assert_eq!(tree.nodes[1].point.dims()[0], 1.);
|
assert_eq!(tree.nodes[1].point.dim(0), 1.);
|
||||||
assert_eq!(tree.nodes[2].point.dims()[0], -1.);
|
assert_eq!(tree.nodes[2].point.dim(0), -1.);
|
||||||
|
|
||||||
assert_eq!(tree.nodes[0].right_node.is_some(), true);
|
assert_eq!(tree.nodes[0].right_node.is_some(), true);
|
||||||
}
|
}
|
||||||
|
@ -1,3 +1,4 @@
|
|||||||
|
use num_traits::Float;
|
||||||
use crate::kdtree::KdTreePoint;
|
use crate::kdtree::KdTreePoint;
|
||||||
|
|
||||||
enum PointsWereOnSide {
|
enum PointsWereOnSide {
|
||||||
@ -11,9 +12,9 @@ struct PartitionPointHelper {
|
|||||||
index_of_splitter: usize,
|
index_of_splitter: usize,
|
||||||
}
|
}
|
||||||
|
|
||||||
fn partition_sliding_midpoint_helper<T: KdTreePoint>(vec: &mut [T], midpoint_value: f64, partition_on_dimension: usize) -> PartitionPointHelper {
|
fn partition_sliding_midpoint_helper<F: Float, T: KdTreePoint<F>>(vec: &mut [T], midpoint_value: F, partition_on_dimension: usize) -> PartitionPointHelper {
|
||||||
let mut closest_index = 0;
|
let mut closest_index = 0;
|
||||||
let mut closest_distance = (vec[0].dims()[partition_on_dimension] - midpoint_value).abs();
|
let mut closest_distance = (vec[0].dim(partition_on_dimension) - midpoint_value).abs();
|
||||||
|
|
||||||
const HAS_POINTS_ON_LEFT_SIDE: i32 = 0b01;
|
const HAS_POINTS_ON_LEFT_SIDE: i32 = 0b01;
|
||||||
const HAS_POINTS_ON_RIGHT_SIDE: i32 = 0b10;
|
const HAS_POINTS_ON_RIGHT_SIDE: i32 = 0b10;
|
||||||
@ -22,13 +23,13 @@ fn partition_sliding_midpoint_helper<T: KdTreePoint>(vec: &mut [T], midpoint_val
|
|||||||
|
|
||||||
for i in 0..vec.len() {
|
for i in 0..vec.len() {
|
||||||
let p = vec.get(i).unwrap();
|
let p = vec.get(i).unwrap();
|
||||||
if p.dims()[partition_on_dimension] <= midpoint_value {
|
if p.dim(partition_on_dimension) <= midpoint_value {
|
||||||
has_points_on_sides |= HAS_POINTS_ON_LEFT_SIDE;
|
has_points_on_sides |= HAS_POINTS_ON_LEFT_SIDE;
|
||||||
} else {
|
} else {
|
||||||
has_points_on_sides |= HAS_POINTS_ON_RIGHT_SIDE;
|
has_points_on_sides |= HAS_POINTS_ON_RIGHT_SIDE;
|
||||||
}
|
}
|
||||||
|
|
||||||
let dist = (p.dims()[partition_on_dimension] - midpoint_value).abs();
|
let dist = (p.dim(partition_on_dimension) - midpoint_value).abs();
|
||||||
|
|
||||||
if dist < closest_distance {
|
if dist < closest_distance {
|
||||||
closest_distance = dist;
|
closest_distance = dist;
|
||||||
@ -48,9 +49,9 @@ fn partition_sliding_midpoint_helper<T: KdTreePoint>(vec: &mut [T], midpoint_val
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
pub fn partition_sliding_midpoint<T: KdTreePoint>(vec: &mut [T], midpoint_value: f64, partition_on_dimension: usize) -> usize {
|
pub fn partition_sliding_midpoint<F: Float, T: KdTreePoint<F>>(vec: &mut [T], midpoint_value: F, partition_on_dimension: usize) -> usize {
|
||||||
let vec_len = vec.len();
|
let vec_len = vec.len();
|
||||||
debug_assert!(vec[0].dims().len() > partition_on_dimension);
|
debug_assert!(vec[0].dims() > partition_on_dimension);
|
||||||
|
|
||||||
if vec.len() == 1 {
|
if vec.len() == 1 {
|
||||||
return 0;
|
return 0;
|
||||||
@ -74,12 +75,12 @@ pub fn partition_sliding_midpoint<T: KdTreePoint>(vec: &mut [T], midpoint_value:
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
fn partition_kdtree<T: KdTreePoint>(vec: &mut [T], index_of_splitting_point: usize, partition_on_dimension: usize) -> usize {
|
fn partition_kdtree<F: Float, T: KdTreePoint<F>>(vec: &mut [T], index_of_splitting_point: usize, partition_on_dimension: usize) -> usize {
|
||||||
if vec.len() == 1 {
|
if vec.len() == 1 {
|
||||||
return 0;
|
return 0;
|
||||||
}
|
}
|
||||||
|
|
||||||
let pivot = vec[index_of_splitting_point].dims()[partition_on_dimension];
|
let pivot = vec[index_of_splitting_point].dim(partition_on_dimension);
|
||||||
let vec_len = vec.len();
|
let vec_len = vec.len();
|
||||||
|
|
||||||
vec.swap(index_of_splitting_point, vec_len - 1);
|
vec.swap(index_of_splitting_point, vec_len - 1);
|
||||||
@ -90,11 +91,11 @@ fn partition_kdtree<T: KdTreePoint>(vec: &mut [T], index_of_splitting_point: usi
|
|||||||
|
|
||||||
//variant of Lomuto algo.
|
//variant of Lomuto algo.
|
||||||
loop {
|
loop {
|
||||||
while left <= right && vec[left].dims()[partition_on_dimension] <= pivot {
|
while left <= right && vec[left].dim(partition_on_dimension) <= pivot {
|
||||||
left += 1;
|
left += 1;
|
||||||
}
|
}
|
||||||
|
|
||||||
while right > left && vec[right].dims()[partition_on_dimension] > pivot {
|
while right > left && vec[right].dim(partition_on_dimension) > pivot {
|
||||||
right -= 1;
|
right -= 1;
|
||||||
}
|
}
|
||||||
|
|
||||||
@ -109,10 +110,10 @@ fn partition_kdtree<T: KdTreePoint>(vec: &mut [T], index_of_splitting_point: usi
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
if last_succesful_swap == vec_len - 1 && vec[right].dims()[partition_on_dimension] > pivot {
|
if last_succesful_swap == vec_len - 1 && vec[right].dim(partition_on_dimension) > pivot {
|
||||||
vec.swap(right, last_succesful_swap);
|
vec.swap(right, last_succesful_swap);
|
||||||
last_succesful_swap = right;
|
last_succesful_swap = right;
|
||||||
} else if vec[left].dims()[partition_on_dimension] > pivot {
|
} else if vec[left].dim(partition_on_dimension) > pivot {
|
||||||
vec.swap(left, vec_len - 1);
|
vec.swap(left, vec_len - 1);
|
||||||
last_succesful_swap = left;
|
last_succesful_swap = left;
|
||||||
} else {
|
} else {
|
||||||
@ -228,16 +229,16 @@ mod tests {
|
|||||||
}
|
}
|
||||||
|
|
||||||
fn assert_partition(v: &Vec<Point1WithId>, index_of_splitting_point: usize) -> bool {
|
fn assert_partition(v: &Vec<Point1WithId>, index_of_splitting_point: usize) -> bool {
|
||||||
let pivot = v[index_of_splitting_point].dims()[0];
|
let pivot = v[index_of_splitting_point].dim(0);
|
||||||
|
|
||||||
for i in 0..index_of_splitting_point {
|
for i in 0..index_of_splitting_point {
|
||||||
if v[i].dims()[0] > pivot {
|
if v[i].dim(0) > pivot {
|
||||||
return false;
|
return false;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
for i in index_of_splitting_point + 1..v.len() {
|
for i in index_of_splitting_point + 1..v.len() {
|
||||||
if v[i].dims()[0] < pivot {
|
if v[i].dim(0) < pivot {
|
||||||
return false;
|
return false;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
@ -15,10 +15,15 @@ impl Point3WithId {
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
impl KdTreePoint for Point3WithId {
|
impl KdTreePoint<f64> for Point3WithId {
|
||||||
#[inline]
|
#[inline]
|
||||||
fn dims(&self) -> &[f64] {
|
fn dims(&self) -> usize {
|
||||||
return &self.dims;
|
self.dims.len()
|
||||||
|
}
|
||||||
|
|
||||||
|
#[inline]
|
||||||
|
fn dim(&self, i: usize) -> f64 {
|
||||||
|
self.dims[i]
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
@ -37,10 +42,15 @@ impl Point2WithId {
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
impl KdTreePoint for Point2WithId {
|
impl KdTreePoint<f64> for Point2WithId {
|
||||||
#[inline]
|
#[inline]
|
||||||
fn dims(&self) -> &[f64] {
|
fn dims(&self) -> usize {
|
||||||
return &self.dims;
|
self.dims.len()
|
||||||
|
}
|
||||||
|
|
||||||
|
#[inline]
|
||||||
|
fn dim(&self, i: usize) -> f64 {
|
||||||
|
self.dims[i]
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
@ -59,9 +69,14 @@ impl Point1WithId {
|
|||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
impl KdTreePoint for Point1WithId {
|
impl KdTreePoint<f64> for Point1WithId {
|
||||||
#[inline]
|
#[inline]
|
||||||
fn dims(&self) -> &[f64] {
|
fn dims(&self) -> usize {
|
||||||
return &self.dims;
|
self.dims.len()
|
||||||
|
}
|
||||||
|
|
||||||
|
#[inline]
|
||||||
|
fn dim(&self, i: usize) -> f64 {
|
||||||
|
self.dims[i]
|
||||||
}
|
}
|
||||||
}
|
}
|
@ -7,5 +7,3 @@ extern crate rand;
|
|||||||
|
|
||||||
pub mod kdtree;
|
pub mod kdtree;
|
||||||
|
|
||||||
#[cfg(test)]
|
|
||||||
mod bench;
|
|
||||||
|
@ -1,22 +1,19 @@
|
|||||||
extern crate kdtree;
|
|
||||||
extern crate rand;
|
|
||||||
|
|
||||||
use rand::Rng;
|
use rand::Rng;
|
||||||
|
|
||||||
use kdtree::kdtree::test_common::*;
|
use kdtree::kdtree::test_common::*;
|
||||||
use kdtree::kdtree::KdTreePoint;
|
use kdtree::kdtree::KdTreePoint;
|
||||||
use kdtree::kdtree::distance::squared_euclidean;
|
use kdtree::kdtree::KdTree;
|
||||||
|
|
||||||
fn gen_random() -> f64 {
|
fn gen_random() -> f64 {
|
||||||
rand::thread_rng().gen_range(0., 1000.)
|
rand::thread_rng().gen_range(0., 1000.)
|
||||||
}
|
}
|
||||||
|
|
||||||
fn find_nn_with_linear_search(points : &Vec<Point3WithId>, find_for : Point3WithId) -> (f64, &Point3WithId) {
|
fn find_nn_with_linear_search(points : &Vec<Point3WithId>, find_for : Point3WithId) -> (f64, &Point3WithId) {
|
||||||
let mut best_found_distance = squared_euclidean(find_for.dims(), points[0].dims());
|
let mut best_found_distance = find_for.dist(&points[0]);
|
||||||
let mut closed_found_point = &points[0];
|
let mut closed_found_point = &points[0];
|
||||||
|
|
||||||
for p in points {
|
for p in points {
|
||||||
let dist = squared_euclidean(find_for.dims(), p.dims());
|
let dist = find_for.dist(p);
|
||||||
|
|
||||||
if dist < best_found_distance {
|
if dist < best_found_distance {
|
||||||
best_found_distance = dist;
|
best_found_distance = dist;
|
||||||
@ -31,7 +28,7 @@ fn find_neigbours_with_linear_search(points : &Vec<Point3WithId>, find_for : Poi
|
|||||||
let mut result = Vec::new();
|
let mut result = Vec::new();
|
||||||
|
|
||||||
for p in points {
|
for p in points {
|
||||||
let d = squared_euclidean(find_for.dims(), p.dims());
|
let d = find_for.dist(p);
|
||||||
|
|
||||||
if d <= dist {
|
if d <= dist {
|
||||||
result.push((d, p));
|
result.push((d, p));
|
||||||
@ -56,9 +53,9 @@ fn generate_points(point_count : usize) -> Vec<Point3WithId> {
|
|||||||
fn test_against_1000_random_points() {
|
fn test_against_1000_random_points() {
|
||||||
let point_count = 1000usize;
|
let point_count = 1000usize;
|
||||||
let points = generate_points(point_count);
|
let points = generate_points(point_count);
|
||||||
kdtree::kdtree::test_common::Point1WithId::new(0,0.);
|
Point1WithId::new(0,0.);
|
||||||
|
|
||||||
let tree = kdtree::kdtree::KdTree::new(&mut points.clone());
|
let tree = KdTree::new(&mut points.clone());
|
||||||
|
|
||||||
//test points pushed into the tree, id should be equal.
|
//test points pushed into the tree, id should be equal.
|
||||||
for i in 0 .. point_count {
|
for i in 0 .. point_count {
|
||||||
@ -83,8 +80,8 @@ fn test_incrementally_build_tree_against_built_at_once() {
|
|||||||
let point_count = 2000usize;
|
let point_count = 2000usize;
|
||||||
let mut points = generate_points(point_count);
|
let mut points = generate_points(point_count);
|
||||||
|
|
||||||
let tree_built_at_once = kdtree::kdtree::KdTree::new(&mut points.clone());
|
let tree_built_at_once = KdTree::new(&mut points.clone());
|
||||||
let mut tree_built_incrementally = kdtree::kdtree::KdTree::new(&mut points[0..1]);
|
let mut tree_built_incrementally = KdTree::new(&mut points[0..1]);
|
||||||
|
|
||||||
for i in 1 .. point_count {
|
for i in 1 .. point_count {
|
||||||
let p = &points[i];
|
let p = &points[i];
|
||||||
@ -113,7 +110,7 @@ fn test_incrementally_build_tree_against_built_at_once() {
|
|||||||
fn test_neighbour_search_with_distance() {
|
fn test_neighbour_search_with_distance() {
|
||||||
let point_count = 1000usize;
|
let point_count = 1000usize;
|
||||||
let points = generate_points(point_count);
|
let points = generate_points(point_count);
|
||||||
let tree = kdtree::kdtree::KdTree::new(&mut points.clone());
|
let tree = KdTree::new(&mut points.clone());
|
||||||
|
|
||||||
for _ in 0 .. 500 {
|
for _ in 0 .. 500 {
|
||||||
let dist = 100.0;
|
let dist = 100.0;
|
||||||
|
Loading…
Reference in New Issue
Block a user